• Skip to primary navigation
  • Skip to main content
  • Skip to primary sidebar

Baked Bree

Pretty pictures and delicious family recipes

  • pasta
  • salad
  • desserts
  • cookies
  • dinner

Healthy Pumpkin Cookies

No ratings yet
Diane GoodmanBy Diane Goodman
Diane Goodman
Diane Goodman Food Writer

Diane’s passion for cooking and writing inspired her to open Diane Cooks, Inc., a private chef and boutique catering company, and to write 3 collections of food-themed short stories, The Genius of …

Expertise: Former owner of private chef & boutique catering company, Diane Cooks, Inc. View all posts →
Jump to Recipe

Soft and chewy, sweet and warmly spiced, these Healthy Pumpkin Cookies also contain lots of ingredients that are good for you!

Fudgy chocolate chip cookies stacked on a marble surface. Perfect for baking and dessert recipes.

Are you surprised—and delighted!—to see a recipe that contains the words “healthy” and “cookie” in it? I know I am. While I never turn down any kind of dessert and never feel guilty about indulging in sweets, sometimes it’s just really nice to eat something that tastes decadent but is actually wholesome.

Like these healthy pumpkin cookies. Made with pumpkin purée, unsweetened applesauce, and whole-wheat flour but without eggs or dairy, these cookies are everything you want a delicious treat to be. They are soft, chewy, sweet, and rich from the pumpkin pie spices (cinnamon, nutmeg, ginger, cloves, and allspice) and vanilla. And every bite brings the added bonus of dark chocolate chips. So yummy.

The recipe is very straightforward and a great way for novice cooks to get comfortable with baking. All the dry ingredients get mixed in one bowl, and the wet ones get mixed in another. Then they are combined, the chocolate chips are folded in, and you drop your dough on a parchment-lined baking sheet. Into the oven it goes! And when they come out? Oh boy—you’ll have these moist and rich cookies that will become a family favorite.

The health benefits of using pumpkin

Pumpkin, a member of the winter squash family, is considered a vegetable, but it’s technically a fruit because it contains seeds. Pumpkin is packed with essential vitamins, minerals, and antioxidants, including beta carotene (which the body converts to vitamin A), vitamin C, iron, and folate. Low in calories and a good source of fiber, pumpkin is also low in sugar and carbohydrates.

You can make pumpkin purée yourself by cutting a pumpkin in half, deseeding it, and roasting the halves at 375°F for about 60 minutes. Once the flesh is tender, simply scoop it out. Of course, using canned pumpkin is easy and convenient. You can add the purée to everything from healthy baked goods to comforting soups.

Sweet potato baking ingredients for pie including mashed sweet potatoes, flour, sugar, chocolate chips, and spices.

How do I store leftovers?

Store your leftover cookies in an airtight container at room temperature for up to 3 days. You can also store them in the fridge a bit longer (5 days) or in the freezer (in a Ziploc bag) for up to 3 months. For best results, flash-freeze them on a baking tray first to prevent them from sticking together. Thaw at room temperature.

Buttery chocolate chip cookies on gray stone serving platter, homemade dessert, baked goods, sweet treat, cookie recipe.

Serving suggestions

In keeping with my “there’s no such thing as too much pumpkin” motto, I love to spread Easy Pumpkin Dip between two healthy pumpkin cookies and then top the cookie sandwich with a light drizzle of Dairy-Free Pumpkin Spice Syrup. But my fall desserts don’t only have to feature pumpkin. I love to serve healthy pumpkin cookies with No-Churn Salted Cinnamon Ice Cream or Brown Sugar Ice Cream, and then top either one with Homemade Caramel Sauce and garnish with Sugared Cranberries.

Chocolate chip cookies with golden-brown edges and gooey chocolate chunks.
Fudgy chocolate chip cookies stacked on a marble surface. Perfect for baking and dessert recipes.

Healthy Pumpkin Cookies

Smiling woman with glasses and dark hair, professional portrait for Baked Bree website.Diane Goodman
No ratings yet
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 15 minutes mins
Total Time 25 minutes mins
Course desserts
Cuisine American
Servings 24 cookies
Calories 136 kcal

Ingredients
  

  • 1 can pumpkin purée (15 ounces)
  • 1/2 cup unsweetened applesauce
  • 3/4 cup granulated sugar
  • 1/4 cup brown sugar
  • 3/4 teaspoon vanilla extract
  • 2 cups whole-wheat flour
  • 1 teaspoon baking soda
  • 1 teaspoon baking powder
  • 1/4 teaspoon salt
  • 2 1/4 teaspoons pumpkin pie spice
  • 1 cup dark chocolate chips

Instructions
 

  • Preheat the oven to 350°F and line a baking sheet with parchment paper.
    Baked Bree baking sheet with parchment paper ready for baking or roasting.
  • In a bowl, mix pumpkin purée, applesauce, sugars, and vanilla until blended.
    Creamy pumpkin pie filling ingredients in a mixing bowl, ready for baking.
  • In a separate bowl, whisk together the flour, baking soda, baking powder, salt, and pumpkin pie spice.
    Flour and spices in a mixing bowl for baking your favorite desserts.
  • Gradually add the dry ingredients to the wet, mixing until just combined.
    Flour, sugar, and eggs being mixed for homemade baking on a light countertop.
  • Fold the dark chocolate chips into the batter.
  • Drop the batter by rounded tablespoons onto the prepared baking sheet, spacing them about 2 inches apart.
    Gooey cookie dough balls on parchment paper ready for baking.
  • Bake for 12-15 minutes, or until the edges are lightly browned.
    Soft chocolate chip cookies on baking sheet, fresh from oven.
  • Allow the cookies to cool on the baking sheet for 2 minutes before transferring them to a wire rack to cool completely.
    Freshly baked chocolate chip cookies on a baking sheet with parchment paper.

Nutrition

Calories: 136kcalCarbohydrates: 21gProtein: 2gFat: 5gSaturated Fat: 3gSodium: 373mgFiber: 2g
Keyword Healthy Pumpkin Cookies
Tried this recipe?Let us know how it was!
Smiling woman with glasses and dark hair, professional portrait for Baked Bree website.

About Diane Goodman

Diane’s passion for cooking and writing inspired her to open Diane Cooks, Inc., a private chef and boutique catering company, and to write 3 collections of food-themed short stories, The Genius of Hunger, The Plated Heart, and Party Girls, all featuring characters who are chefs, waiters, caterers, grocery shoppers, home cooks, and people throwing parties.

Reader Interactions

Published: Aug 4, 2025 | Updated: Jan 17, 2026

Leave a Comment Cancel reply

Have a question? Use the form below to submit your question or comment. I love hearing from you and seeing what you made!

Recipe Rating




Warm cinnamon muffin broken in half on a wooden cutting board. Freshly baked muffins with a golden-brown crust. Perfect for breakfast or snack.
Previous Post
Morning Glory Muffins
Creamy chicken and pea tortellini in a skillet, garnished with fresh herbs, perfect for cozy family dinners.
Next Post
Tuna Helper

Primary Sidebar

Let's Connect

Back to Top
  • About
  • Contact
  • Privacy Policy
  • Terms and Conditions
Baked Bree is part of Waywith.

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required