Reduce the oven temperature to 325°F.
In a clean food processor or in a large mixing bowl with a hand or stand mixer, beat the cream cheese and sugar together until completely smooth and no lumps remain, scraping down the bowl as needed.
Add the egg, lemon zest, sour cream, vanilla, almond extract, and salt. Mix on low speed or pulse just until incorporated and the batter is smooth; avoid whipping in too much air.
Divide the cheesecake batter evenly among the jars, spooning or pouring it over the baked crusts and leaving about 1/2 inch of headspace at the top of each jar. Gently tap the pan on the counter to release any large air bubbles.
Bring a kettle or small pot of water to a boil, then reduce to a simmer.
With the jars still in the 9x13-inch pan, carefully pour the hot water into the pan until it comes about halfway up the sides of the jars, taking care not to splash water into any jars.
Transfer the pan to the oven. Bake for 25-30 minutes, or until the cheesecakes are puffed around the edges and the centers still have a slight jiggle when gently nudged. They should not look wet or liquid in the middle.
Turn off the oven and crack the door open for 5 minutes to let the cheesecakes begin to cool in the water bath, which helps prevent cracking.
Carefully remove the pan from the oven. Use tongs or an oven mitt to lift the jars out of the hot water and place them on a wire rack. Cool to room temperature, 45-60 minutes.