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Butternut Squash Mac And Cheese

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Bree HesterBy Bree Hester
Bree Hester
Bree Hester Founder of Baked Bree

Bree Hester is the recipe developer, writer and food photographer behind Baked Bree. She started Baked Bree in February 2010 as a love letter to anyone that has ever come to her house for a meal. O…

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Fragrant sage adds a cozy touch to this Butternut Squash Mac And Cheese—a hearty meal perfect for chilly evenings and holiday spreads.

Creamy baked mac and cheese in a white casserole dish with sage garnish.

Macaroni and cheese hits the spot every time. But what if I were to tell you there was a way to sneak some veggies into this classic meal without any picky eaters realizing it?

Say hello to butternut squash mac and cheese. When I made it for the first time, my husband and kids couldn’t get enough. It’s a stick-to-your-ribs kind of meal.

Let’s talk ingredients. First, you have the butternut squash, which is available year-round, though it becomes extremely popular around the autumn. One medium (about a pound) squash is a good size. You can peel, deseed, and cube it yourself or purchase the already prepared squash at the store.

Sage is another key ingredient. This herb is incredibly savory and earthy and balances out the squash’s inherent sweetness. Look for leaves that are big and sturdy, with no signs of wilting or bruising.

Let’s not forget about the dry mustard. You’ll find it in the spice aisle of the grocery store. If you can’t find the dry mustard, use two tablespoons of Dijon mustard instead.

Of course, my family’s favorite ingredient is all the cheese! A mix of mild and sharp cheddar, along with nutty Parmesan, creates a creamy, savory contrast to the naturally sweet squash. Gruyère or smoked Gouda would also be delicious picks.

As for the noodles, I absolutely adore cavatappi for their unique corkscrew shape. However, penne, ziti, rigatoni, or elbows would all work as well. Just be sure to cook according to the package directions.

Last, but definitely not least, we have the breadcrumb topping. While this mac and cheese tastes good without it, the breadcrumb topping adds a rich, savory crunch that’s downright irresistible.

I love serving butternut squash mac and cheese on cozy, cold nights. It just feels right. This recipe is also the perfect side for Thanksgiving and Christmas. And if you’re lucky, there might be some leftovers!

Creamy baked pasta ingredients including shredded cheese, butternut squash, pasta, onion, and herbs.

Why use butternut squash both ways

I’ve tried butternut squash mac and cheese that uses only mashed squash. While it still tastes delicious, I prefer using two cooking methods instead of one. Roasting the squash caramelizes the edges and accentuates this veggie’s natural sweetness. The puréed squash acts as a thickener, making everything extra creamy without adding more cream. Is it more laborious? Yes, but after a taste, I think you’ll understand why it’s worth the extra effort!

Golden breadcrumbs in a black skillet with a wooden spoon for homemade crispy topping.

How do I store leftovers?

After the mac and cheese cools, cover the dish tightly or move the leftovers to an airtight container. Refrigerate for up to 5 days. To reheat a full casserole, cover the mac and cheese with foil, then bake at 350°F for about 30 minutes. If you’re heating individual servings, bake in a parchment-lined baking sheet at 350°F for 10 to 12 minutes. You can also microwave single portions—cover them loosely with a paper towel to prevent the mac and cheese from drying out.

To freeze leftovers, cool completely and cut into large portions. Place on a baking sheet and freeze for 2 hours. Transfer the frozen individual portions to an airtight container, label, date, and freeze for up to 1 month. Thaw overnight in the fridge.

Creamy macaroni and cheese topped with fresh sage leaves on a white plate.

Serving suggestions

Since butternut squash mac and cheese is such a hearty dish, I’d recommend enjoying it with a lighter side, such as a Kale Salad. For something more “fancy,” try this Winter Salad—it’s topped with pecans, apples, and pomegranate. Warm veggies are great as well, especially Roasted Broccoli And Carrots.

It also makes a beautiful spot on your Thanksgiving table, along with Savory Vegetable Crisp and Make-Ahead Mashed Potatoes.

Creamy macaroni and cheese casserole topped with breadcrumbs and fresh sage.
Creamy baked mac and cheese in a white casserole dish with sage garnish.

Butternut Squash Mac And Cheese

Bree Hester
No ratings yet
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Prep Time 20 minutes mins
Cook Time 1 hour hr 21 minutes mins
Total Time 1 hour hr 41 minutes mins
Course pasta
Cuisine American
Servings 8 servings
Calories 793 kcal

Ingredients
  

Macaroni And Cheese:

  • 1 butternut squash peeled, deseeded, and cut into chunks
  • 1 tablespoon olive oil
  • Salt and pepper
  • 1 pound cavatappi noodles
  • 6 tablespoons butter divided
  • 1 onion finely chopped
  • 1 clove garlic finely minced
  • 12 sage leaves finely chopped, plus more for garnish
  • 6 tablespoons flour
  • 2 teaspoons dry mustard
  • 2 cups half-and-half
  • 2 cups whole milk
  • 1 1/2 cups shredded sharp cheddar cheese
  • 1 1/2 cups shredded cheddar cheese
  • 1 cup shredded Parmesan cheese

Breadcrumb Topping:

  • 2 tablespoons butter
  • 1 cup Italian seasoned breadcrumbs

Instructions
 

  • Preheat the oven to 375° F. Line a baking sheet with foil or parchment paper.
  • Place about two-thirds of the squash on the baking sheet. Drizzle with olive oil and season with salt and pepper. Roast for 20 minutes, or until just tender. It will finish cooking with the mac and cheese.
    Crispy roasted sweet potato cubes on baking sheet with parchment paper.
  • Add the remaining squash to a microwave-safe bowl with 1/3 cup of water. Cover with plastic wrap and microwave on HIGH for 8 minutes, or until very soft. Drain and mash with a fork. Set aside.
    Pureed butternut squash for baking or cooking recipes.
  • In a large pot of salted water, cook the cavatappi pasta according to package directions or until just al dente.
  • Meanwhile, in a large sauté pan, melt 2 tablespoons of butter over medium heat. Add the onion and cook until softened, about 5 minutes. Stir in the garlic and sage. Cook for an additional minute, until fragrant. Season with salt and pepper.
    Sautéing chopped onions and green herbs in a skillet for delicious recipes.
  • Add the remaining 4 tablespoons of butter to the pan and let it melt. Add in the flour and dry mustard, stirring constantly for 1 minute, or until the mixture forms a thick paste.
    Sautéing onions and garlic with flour and spices in a frying pan for cooking or baking.
  • Gradually whisk in the half-and-half and milk. Whisk constantly to avoid lumps. Cook until the sauce has come to a gentle bubble and thickens enough to coat the back of your spoon, about 4 minutes.
    Creamy dessert mixture with chopped pecans in a skillet, ready for baking.
  • Remove the pan from the heat. Stir in 1 cup of the sharp cheddar, 1 cup of the mild cheddar, and 1/2 cup of the Parmesan until melted and smooth.
    Creamy cheese sauce with shredded cheddar and Monterey Jack cheese melting in a skillet.
  • Add the roasted and mashed squash to the sauce. Stir until everything is fully combined. Taste and add salt and pepper as needed.
    Creamy potato soup with roasted sweet potatoes and diced butternut squash.
  • Add the drained pasta. Mix everything together until the pasta is well-coated and the squash is evenly distributed.
    Creamy pasta with cheese and butter in a black skillet, ready for serving. Perfect comfort food recipe, easy to make at home.
  • Lightly coat a 9×13-inch pan with cooking spray, then pour the mac and cheese mixture into the dish. Spread it into an even layer.
    Creamy baked macaroni and cheese in a white casserole dish with cheese and pasta.
  • To make the breadcrumb topping, melt butter in a small sauté pan over medium-high heat. Add Italian seasoned breadcrumbs and stir frequently for about 3 minutes or until toasted and fragrant.
    Golden breadcrumbs in a black skillet with a wooden spoon for homemade crispy topping.
  • Sprinkle the toasted breadcrumbs evenly over the macaroni and cheese. Top with the remaining sharp cheddar, mild cheddar, and Parmesan. Bake for 30 to 40 minutes, or until golden brown and bubbling. Garnish with sage leaves.
    Creamy macaroni and cheese baked casserole with shredded cheese and breadcrumbs.

Video

Nutrition

Calories: 793kcalCarbohydrates: 76gProtein: 30gFat: 42gSaturated Fat: 23gSodium: 836mgFiber: 5g
Keyword breadcrumb topping, cheddar, fall
Tried this recipe?Let us know how it was!

About Bree Hester

Bree Hester is the recipe developer, writer and food photographer behind Baked Bree. She started Baked Bree in February 2010 as a love letter to anyone that has ever come to her house for a meal. Over the years it has evolved into so much more than that. While Bree may have hung up her apron for the last time, the reins have now been passed over to a passionate team of foodies.

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Published: Sep 4, 2024 | Updated: Dec 18, 2025

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